Difference between revisions of "Aquatic ecosystem simulation"

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=Introduction and problem definition=
 
=Introduction and problem definition=
−
This simulation aims to replicate, in a simplified form, the intricate dynamics of marine life in the Pacific Ocean based on real-world scientific data. While the simulation is not an exact replica due to the immense complexity of marine ecosystems, it serves as a representative model. The focus lies on food webs, and interactions between species within the ecosystem. The primary goal is to explore how environmental changes impact marine populations.
 
−
 
 
[[File:Start_picture.png|thumb|600px| Simulation overview]]
 
[[File:Start_picture.png|thumb|600px| Simulation overview]]
 +
This simulation aims to replicate, in a simplified form, the intricate dynamics of marine life in the Pacific Ocean based on real-world scientific data. While the simulation is not an exact replica due to the immense complexity of marine ecosystems, it serves as a representative model. The focus lies on food webs, and interactions between species within the ecosystem. The primary goal is to explore how different changes can impact marine populations.
  
 
=Environment=
 
=Environment=
 +
[[File:Plantsscreen.jpg|thumb|600px| Plants overview]]
 
The foundational environment of the simulation consists of a vibrant blue water body, hosting a diverse ecosystem of our agents. Within this aquatic realm, three distinct varieties of plants thrive, each represented by a different color.
 
The foundational environment of the simulation consists of a vibrant blue water body, hosting a diverse ecosystem of our agents. Within this aquatic realm, three distinct varieties of plants thrive, each represented by a different color.
  
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The red color signifies plants that grow at a slower rate. These plants are consumed by fish with a mixed dietary preference.
 
The red color signifies plants that grow at a slower rate. These plants are consumed by fish with a mixed dietary preference.
−
 
−
[[File:Plantsscreen.jpg|thumb|600px]]
 
  
 
=Agents=
 
=Agents=
 +
[[File:agents-screen-overview.jpg|thumb|600px|Agents overview]]
 
* '''Fishes''': Inspired by real Pacific Ocean species, each with specific traits such as energy levels, reproduction rates, and movement patterns. In this simulation, three distinct types of fish are introduced, each representing different fish families: fish1 (blue), fish2 (black), and fish3 (red). Each type is associated with different feeding strategies, reflecting various fish families.
 
* '''Fishes''': Inspired by real Pacific Ocean species, each with specific traits such as energy levels, reproduction rates, and movement patterns. In this simulation, three distinct types of fish are introduced, each representing different fish families: fish1 (blue), fish2 (black), and fish3 (red). Each type is associated with different feeding strategies, reflecting various fish families.
  
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   ]
 
   ]
  
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* '''Plankton''': In the simulation, '''plankton''' is represented as a type '''phytoplankton'''. Phytoplankton are microscopic, photosynthetic organisms that form the foundation of marine food webs. While in reality, zooplankton (which consumes other plankton) also plays a crucial role, for the purpose of simplification in this simulation, the focus is on phytoplankton. And this type doesn't has any function for feeding.  
+
* '''Plankton''': In the simulation, '''plankton''' is represented as a type '''phytoplankton'''. Phytoplankton are microscopic, photosynthetic organisms that form the foundation of marine food webs. While in reality, zooplankton (which consumes other plankton) also plays a crucial role, for the purpose of simplification in this simulation, the focus is on phytoplankton. And this type doesn't has any function for feeding. In the simulation it looks like a '''small white circle''' that moves very fast.
  
 
   ask planktons [
 
   ask planktons [
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   ]
 
   ]
  
−
=Functions=
+
=How to use the simulation=
−
Every agent is equipped with three fundamental functions: move, eat, reproduce, and death. These functions form the core behaviors for each organism.
+
[[File:Parametrs.jpg|thumb|600px|Parametrs]]
 +
 
 +
The simulation provides a wide range of parameters that users can configure both at the start and during the simulation process. These parameters are divided into agent-specific and environmental settings.
 +
 
 +
 
 +
== Plant parameters ==
 +
 
 +
 
 +
* '''Growth rate (Plants)'''
 +
 
 +
Users can set the speed at which plants grow. This parameter influences the availability of food for the agents, affecting the overall ecosystem dynamics.
 +
 
 +
'''Note''': The parameters for plants can be set separately for each type.
 +
 
  
−
'''Move Function'''
 
  
−
  rt random 50
+
== Agent parameters ==
−
  lt random 50
 
−
  fd pace
 
  
−
The move function is consistent across all agents, differing only in the "pace" parameter, which is specified during the agent's creation. Each agent has its unique pace, selected based on its individual parameters:
 
  
−
* Plankton pace 5
+
=== Fishes ===
−
* Shark pace 0.1
 
−
* Fish1 pace random-normal 1 0.5
 
−
* Fish2 pace random-normal 2 0.1
 
−
* Fish3 pace random-normal 1 0.1
 
  
−
=Variables=
+
*'''Number of fish'''
  
−
* '''Water temperature''' - Influences the reproduction rates of fishes and sharks, reflecting observed correlations in the Pacific Ocean.
+
Users can set the initial number of fish in the simulation.
  
−
* '''Pollution''' - Affects the regrowth time of plants, mirroring real-world impacts on marine life.
+
*'''Energy gain from food (Fish)'''
  
 +
Determines the amount of energy each fish gains from consuming food, influencing their lifespan.
 +
 +
*'''Reproduction rate (Fish)'''
 +
 +
Governs how quickly fish reproduce in the simulation.
 +
 +
'''Note''': The parameters for fish can be set separately for each type.
 +
 +
 +
=== Sharks ===
 +
 +
*'''Number of sharks'''
 +
 +
Users can set the initial number of sharks in the simulation.
 +
 +
*'''Energy gain from food (Sharks)'''
 +
 +
Defines the energy gain for sharks when consuming food.
 +
 +
*'''Reproduction rate (Sharks)'''
 +
 +
Controls the rate at which sharks reproduce.
 +
 +
 +
=== Plankton ===
 +
 +
*'''Number of plankton'''
 +
 +
Specifies the initial number of plankton in the simulation.
 +
 +
*'''Reproduction rate (Plankton)'''
 +
 +
Governs how quickly plankton reproduce.
 +
 +
'''Note''': Plankton, being phytoplankton, acquires energy differently and does not have a parameter to influence energy gain from food.
 +
 +
== Environmental parameters ==
 +
 +
 +
*'''Water temperature'''
 +
 +
Initially set at 10 degrees, water temperature affects the reproduction rates of fish and sharks differently. Colder water accelerates shark reproduction and decelerates fish reproduction, while warmer water has the opposite effect. Different fish types respond to temperature fluctuations distinctively.
 +
 +
*'''Pollution'''
 +
 +
Initially set at 0 %, this function mimics real-life water pollution effects. It slows down agent reproduction but accelerates plant growth. The impact varies among different plant species.
 +
 +
Users can experiment with these parameters to observe how changes affect the ecosystem, with temperature and pollution having unique impacts on different agents.
 +
 +
 +
'''End of simulation'''
 +
 +
The simulation concludes under two conditions:
 +
 +
*'''Extinction of All Agents'''
 +
 +
If all agents, including fish and sharks, are eradicated from the environment, the simulation reaches its conclusion. This scenario signifies a collapse of the entire ecosystem.
 +
 +
*'''Extinction of Sharks'''
 +
 +
The simulation also concludes when all sharks disappear. Since the system relies on predators to maintain balance, the absence of sharks indicates a breakdown in the predator-prey relationship, leading to an unsustainable ecosystem.
 +
 +
'''Note''': It's worth noting that the second condition might be redundant because if all fish disappear, sharks would naturally perish due to the lack of prey. However, including this condition explicitly emphasizes the critical role of predators in sustaining the ecosystem.
  
 
=Results=
 
=Results=
−
This simulation provides a simplified yet insightful exploration of the Pacific Ocean's marine ecosystems, drawing inspiration from real-world scientific data. The incorporation of representative data supports understanding potential impacts of environmental changes on marine populations, despite the inherent complexity of the actual ecosystems.
+
The incorporation of representative data supports understanding potential impacts of environmental changes on marine populations, despite the inherent complexity of the actual ecosystems. The specific outcome of the simulation heavily depends on the user's chosen input parameters. There is a possibility to simulate the death of each type of agent. Even minor changes can significantly impact the overall result. It is intriguing to set up a slow simulation, allowing for the regulation of individual parameters based on the situation to maintain stability. Some key findings are presented below. The ability to observe and adapt to the dynamic interactions within the simulated aquatic environment becomes more apparent at a slower simulation pace. This offers users the opportunity to fine-tune parameters and sustain stability as conditions evolve.
 +
 
 +
{| class="wikitable" style="float:right; margin-left:15px;"
 +
| [[File:Resulta1.jpg|thumb|300px]]
 +
| [[File:Resulta2.jpg|thumb|300px]]
 +
| [[File:Resulta3.jpg|thumb|300px]]
 +
|}
 +
 
 +
 
 +
Overall, the simulation proves to be a thought-provoking exercise. The potential for inspiration lies in its adaptability, and further development, such as introducing additional animal species, could elevate it into a more sophisticated and practical tool applicable to real-world aquatic systems.
  
 
=NetLogo File=
 
=NetLogo File=
−
Below I attach the source file
+
[[File:Simulation_aquatic_ZIP.zip]]
 +
[[File:Simulation_aquatic.nlogo]]
  
 +
=Sources=
 +
https://en.wikipedia.org/wiki/Marine_food_web
  
−
=Sources=
+
https://www.nalms.org/wp-content/uploads/2018/09/31-2-5.pdf
−
<references/>
+
 
 +
https://www.proquest.com/scholarly-journals/trophic-ecology-midwater-zooplankton-along/docview/2777156066/se-2?accountid=17203
 +
 
 +
https://www.proquest.com/scholarly-journals/ocean-dynamics-biological-feedbacks-limit/docview/2773879431/se-2?accountid=17203
 +
 
 +
https://study.com/academy/lesson/the-food-web-of-the-pacific-ocean.html
 +
 
 +
https://prezi.com/y_4u_vws0rxt/pacific-ocean-food-web/
 +
 
 +
https://www.sciencedirect.com/topics/agricultural-and-biological-sciences/aquatic-food-webs

Latest revision as of 21:02, 20 January 2024

Title: Aquatic ecosystem simulation

Author: Daria Tutynina

Method: Agent-based model

Tool: NetLogo

Introduction and problem definition

Simulation overview

This simulation aims to replicate, in a simplified form, the intricate dynamics of marine life in the Pacific Ocean based on real-world scientific data. While the simulation is not an exact replica due to the immense complexity of marine ecosystems, it serves as a representative model. The focus lies on food webs, and interactions between species within the ecosystem. The primary goal is to explore how different changes can impact marine populations.

Environment

Plants overview

The foundational environment of the simulation consists of a vibrant blue water body, hosting a diverse ecosystem of our agents. Within this aquatic realm, three distinct varieties of plants thrive, each represented by a different color. 

 to setup-ocean
 set ocean-color blue - 2
 set green-plant-regrowth-time 20
 set yellow-plant-regrowth-time 15
 set red-plant-regrowth-time 10
 ...

Green color (Spirulina)

The green color symbolizes spirulina, a microscopic cyanobacterium abundant in the water. This type of plant serves as a primary food source for a large portion of the fish population. Due to its rapid growth, spirulina provides a consistent and plentiful supply of sustenance for the aquatic organisms.

Yellow color (Coral Reefs)

The yellow color represents a highly specific type of plant, resembling coral reefs in the real world. These plants cater to a particular species of fish with a specialized diet. For instance, they might simulate the ecological role of coral species that grow at a moderate pace, offering sustenance to a specific type of fish adapted to this unique environment.

Red Color (Lemnaceae - Coffee Bean Plant)

The red color signifies plants that grow at a slower rate. These plants are consumed by fish with a mixed dietary preference.

Agents

Agents overview
  • Fishes: Inspired by real Pacific Ocean species, each with specific traits such as energy levels, reproduction rates, and movement patterns. In this simulation, three distinct types of fish are introduced, each representing different fish families: fish1 (blue), fish2 (black), and fish3 (red). Each type is associated with different feeding strategies, reflecting various fish families.

The first type, fish1 (blue), represents Generalist Herbivores. These fish have a broader dietary spectrum and can consume a wide variety of different plant species. Their feeding behavior is characterized by the ability to adapt to and consume various types of plants, making them more versatile in their herbivorous diet compared to the specialized herbivores. 

 ask fishes1 [
   move
   set energy energy - 1
   eat-plants fishes1 green
   eat-plants fishes1 yellow
   eat-plants fishes1 red
   death
   reproduce-fish1
 ]

The second type, fish2 (black), represents Specialized Herbivores. These fish exhibit a preference for consuming a very limited range of plant species, showcasing a specialized herbivorous feeding behavior. Their diet is focused on specific types of plants, and they are adapted to extract nutrients from these particular sources. 

 ask fishes2 [
   move
   set energy energy - 1
   eat-plants fishes2 yellow
   death
   reproduce-fish2
 ]

The third type, fish3 (red), represents Omnivorous. These fish have a diverse diet, capable of consuming both plants and plankton. Their feeding behavior is not limited to a specific food source, allowing them to feed on a mixture of plants and small aquatic organisms. The omnivorous nature of these fish makes them adaptable to different environmental conditions and food availability. 

 ask fishes3 [
   move
   set energy energy - 1
   eat-plants fishes3 red
   eat-plankton
   death
   reproduce-fish3
 ]
  • Sharks: In this simulation, the concept of predators is represented by sharks. Sharks are carnivorous creatures, meaning they primarily consume other living organisms. The simulation models the behavior of predators, specifically sharks, within the marine ecosystem. The predatory nature of sharks is implemented in a way that allows them to consume all three types of fish: fish1, fish2, and fish3.
 ask sharks [
   move
   set energy energy - 1
   eat-fishes
   death
   reproduce-sharks
 ]
  • Plankton: In the simulation, plankton is represented as a type phytoplankton. Phytoplankton are microscopic, photosynthetic organisms that form the foundation of marine food webs. While in reality, zooplankton (which consumes other plankton) also plays a crucial role, for the purpose of simplification in this simulation, the focus is on phytoplankton. And this type doesn't has any function for feeding. In the simulation it looks like a small white circle that moves very fast.
 ask planktons [
   move
   reproduce-planktons
   death-plankton
 ]

How to use the simulation

Parametrs

The simulation provides a wide range of parameters that users can configure both at the start and during the simulation process. These parameters are divided into agent-specific and environmental settings.


Plant parameters

  • Growth rate (Plants)

Users can set the speed at which plants grow. This parameter influences the availability of food for the agents, affecting the overall ecosystem dynamics.

Note: The parameters for plants can be set separately for each type.


Agent parameters

Fishes

  • Number of fish

Users can set the initial number of fish in the simulation.

  • Energy gain from food (Fish)

Determines the amount of energy each fish gains from consuming food, influencing their lifespan.

  • Reproduction rate (Fish)

Governs how quickly fish reproduce in the simulation.

Note: The parameters for fish can be set separately for each type.


Sharks

  • Number of sharks

Users can set the initial number of sharks in the simulation.

  • Energy gain from food (Sharks)

Defines the energy gain for sharks when consuming food.

  • Reproduction rate (Sharks)

Controls the rate at which sharks reproduce.


Plankton

  • Number of plankton

Specifies the initial number of plankton in the simulation.

  • Reproduction rate (Plankton)

Governs how quickly plankton reproduce.

Note: Plankton, being phytoplankton, acquires energy differently and does not have a parameter to influence energy gain from food.

Environmental parameters

  • Water temperature

Initially set at 10 degrees, water temperature affects the reproduction rates of fish and sharks differently. Colder water accelerates shark reproduction and decelerates fish reproduction, while warmer water has the opposite effect. Different fish types respond to temperature fluctuations distinctively.

  • Pollution

Initially set at 0 %, this function mimics real-life water pollution effects. It slows down agent reproduction but accelerates plant growth. The impact varies among different plant species.

Users can experiment with these parameters to observe how changes affect the ecosystem, with temperature and pollution having unique impacts on different agents.


End of simulation

The simulation concludes under two conditions:

  • Extinction of All Agents

If all agents, including fish and sharks, are eradicated from the environment, the simulation reaches its conclusion. This scenario signifies a collapse of the entire ecosystem.

  • Extinction of Sharks

The simulation also concludes when all sharks disappear. Since the system relies on predators to maintain balance, the absence of sharks indicates a breakdown in the predator-prey relationship, leading to an unsustainable ecosystem.

Note: It's worth noting that the second condition might be redundant because if all fish disappear, sharks would naturally perish due to the lack of prey. However, including this condition explicitly emphasizes the critical role of predators in sustaining the ecosystem.

Results

The incorporation of representative data supports understanding potential impacts of environmental changes on marine populations, despite the inherent complexity of the actual ecosystems. The specific outcome of the simulation heavily depends on the user's chosen input parameters. There is a possibility to simulate the death of each type of agent. Even minor changes can significantly impact the overall result. It is intriguing to set up a slow simulation, allowing for the regulation of individual parameters based on the situation to maintain stability. Some key findings are presented below. The ability to observe and adapt to the dynamic interactions within the simulated aquatic environment becomes more apparent at a slower simulation pace. This offers users the opportunity to fine-tune parameters and sustain stability as conditions evolve.

Resulta1.jpg
Resulta2.jpg
Resulta3.jpg


Overall, the simulation proves to be a thought-provoking exercise. The potential for inspiration lies in its adaptability, and further development, such as introducing additional animal species, could elevate it into a more sophisticated and practical tool applicable to real-world aquatic systems.

NetLogo File

File:Simulation aquatic ZIP.zip File:Simulation aquatic.nlogo

Sources

https://en.wikipedia.org/wiki/Marine_food_web

https://www.nalms.org/wp-content/uploads/2018/09/31-2-5.pdf

https://www.proquest.com/scholarly-journals/trophic-ecology-midwater-zooplankton-along/docview/2777156066/se-2?accountid=17203

https://www.proquest.com/scholarly-journals/ocean-dynamics-biological-feedbacks-limit/docview/2773879431/se-2?accountid=17203

https://study.com/academy/lesson/the-food-web-of-the-pacific-ocean.html

https://prezi.com/y_4u_vws0rxt/pacific-ocean-food-web/

https://www.sciencedirect.com/topics/agricultural-and-biological-sciences/aquatic-food-webs

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